VIRTUAL SINGLE-CELL AND SPATIAL AGENDA

Time     Speaker(s)    Talk Title
Introduction
https://duke.zoom.us/j/94785844041?pwd=MS8wVUdEZStJOVZVTjRDcGNIK0JYZz09
Meeting ID: 947 8584 4041
Passcode: SCSC-Dev
8:20 AM Simon Gregory, PhD. Professor in Neurology  
Development of Approaches
https://duke.zoom.us/j/94785844041?pwd=MS8wVUdEZStJOVZVTjRDcGNIK0JYZz09
Meeting ID: 947 8584 4041
Passcode: SCSC-Dev
8:30 AM Yarui Diao, PhD. Assistant Professor of Cell Biology Joint analysis of chromatin accessibility and 3D organization in single cells
8:45 AM Dennis Ko, MD, PhD. Associate Professor in Molecular Genetics and Microbiology Using scRNA-seq to understand cellular susceptibility to infection
9:00 AM Hyunjung Min, PhD. Postdoctoral Associate. Filiano Lab, Neurosurgery Using CITE-seq to define a new population of tissue resident T cells
9:15 - 10:00 AM Jeff Moffitt, PhD
Assistant Professor, Program in Cellular and Molecular Medicine,
Boston Children's Hospital, Department of Microbiology, Harvard Medical School
Imaging the transcriptome: Tissue Atlases with MERFISH
10:00 - 10:15 AM Panel / Q&A, Moderator Simon Gregory, PhD. Professor in Neurology  
Break (10:15 - 10:30 AM)
Applications
https://duke.zoom.us/j/91376730727?pwd=WW4ydmdQRHVDdm5sTWY4UXg4S3pldz09
Meeting ID: 913 7673 0727
Passcode: SCSC-App
10:30 AM Erika Hughes, Duke UPGG Graduate Student. Tobin Lab, Molecular Genetics and Microbiology Type 2 Immunity Coordinates Tuberculous Granuloma Formation and Macrophage Epithelialization
10:45 AM Chen Yu, PhD. Postdoctoral Associate. Saban Lab, Ophthalmology Elucidating niche-associated function of microglia by scRNA-seq
11:00 AM James Giarraputo. Duke Medical School Student. Gregory Lab, DMPI Immune cell profiles associated with CIS progression and stability using single-cell analysis
11:15 - 12:00 PM Sisi Chen, PhD
Senior Research Scientist, Division of Biology and Biological Engineering,
Caltech
Probing the multicellular mechanisms of drug response in heterogeneous immune cell populations
12:00 - 12:15 PM Panel / Q&A, Moderator Puru Tata, PhD. Assistant Professor of Cell Biology  
Lunch and Industry Breakout Rooms (12:15 - 1:00 PM)
Industry Breakout Rooms
https://duke.zoom.us/j/94356529088?pwd=d01qT3NENnh6NW5NbjFjQlNpaDI3dz09
Meeting ID: 943 5652 9088
Passcode: SCSC-Ind
12:20 - 12:50 PM Immudex - Stephen Haley
NanoString - Katy Richards-Hrdlicka
10X Genomics - Bryan Hess
illumina - Rachel Kane
MGC - Karen Abramson
sh@immudex.com
krichardshrdlicka@nanostring.com
bryan.hess@10xgenomics.com
rbaker1@illumina.com
karen.abramson@duke.edu
Data Analysis
https://duke.zoom.us/j/93769894471?pwd=N285UytMS0dQZGhqTVdGQlovY2RyZz09
Meeting ID: 937 6989 4471
Passcode: SCSC-Data
1:00 PM Jason Ji, PhD. Assistant Professor of Biostatistics and Bioinformatics Integrative analysis of multi-study single-cell RNA-sequencing datasets identifies conserved immune landscape of COVID-19 patients
1:15 PM Lanie Happ. Duke CBB Student. Dave Lab, Hematologic Malignancies & Cell Therapy A computational framework to connect scRNAseq populations to bulk tumor data to understand origins of cancer
1:30 - 2:00 PM Ambrose Carr, PhD
Computational Biologist
Chan Zuckerberg Initiative
CZI's support for Single-Cell Biology
2:00 - 2:15 PM Panel / Q&A, Moderator Yarui Diao, PhD. Assistant Professor of Cell Biology  
Break (2:15- 2:30 PM)
The Future
https://duke.zoom.us/j/93004404349?pwd=cjVoby9HYmlFSm5LMStlSkl6REJhQT09
Meeting ID: 930 0440 4349
Passcode: SCSC-Futur
2:30 PM Yubin Kang, MD. Professor of Medicine NanoString GeoMx DSP to understand racial disparities in myeloma patients with t(11;14)
2:45 PM Ann Marie Pendergast, PhD. Anthony R. Means Cancer Biology Distinguished Professor Tyrosine Kinase-regulated Transcription Networks Promote Lung Cancer Brain Metastasis
3:00 - 3:45 PM Bing Ren, PhD
Professor of Cellular and Molecular Medicine
Ludwig Institute for Cancer Research
University of California San Diego
Genome Decoded, One Cell a Time
3:45 - 4:00 PM Panel / Q&A, Moderator Xiling Shen, PhD. Hawkins Family Associate Professor, Biomedical Engineering  
Break (4:00 - 4:15 PM)
Flash Talk/Poster Session
https://duke.zoom.us/j/97678777419?pwd=Yyt2M0JoYU5rZEt6aGl2dmg4ejFpUT09
Meeting ID: 976 7877 7419
Passcode: SCSC-FT
4:15 - 4:20 PM Anne West Transcriptomic identification of parvalbumin-positive interneuron subtypes in the mouse nucleus accumbens
4:20 - 4:25 PM Dan Snellings Single-cell DNA sequencing to establish the somatic mutation profile in cerebral cavernous malformations
4:25 - 4:30 PM David Lee ScRNA-seq analysis of muscle stem cells
4:30 - 4:35 PM Elliott SoRelle Virus-mediated single-cell transcriptional heterogeneity and differential fates in EBV-driven lymphoproliferative disease models
4:35 - 4:50 PM Simon Gregory, Moderator Q&A with presenters
Conclusions
https://duke.zoom.us/j/97678777419?pwd=Yyt2M0JoYU5rZEt6aGl2dmg4ejFpUT09
Meeting ID: 976 7877 7419
Passcode: SCSC-FT
4:50 - 5:00 PM Simon Gregory, PhD. Professor in Neurology